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Wang SQ, Liu Y, Ma LY, Liu HB, Tang Y, Wu LP, Wang Z, Li YY, Wu RL, Pang XM†.Isolation and Characterization of Microsatellite Markers and Analysis of Genetic Diversity in Chinese Jujube (Ziziphus jujuba Mill.). PLoS ONE, 2014, 9(6): e99842
Tong C, Shen L, Lv Y, Wang Z, Wang X, Feng S, Li X, Sui Y, Pang XM†, Wu RL†.Structural mapping: how to study the genetic architecture of a phenotypic trait through its formation mechanism. Brief Bioinform, 2014,15(1):43-53
Zhai Y, Lv YF, Li X, Wu WM, Bo WH, Sheng DF, Xu F, Pang XM（庞晓明）, Zheng BZ, Wu RL†. A synthetic framework for modeling the genetic basis of phenotypic plasticity and its costs. New Phytol 20: 357-365, 2014(SCI收录)
Wang Z, Kang M, Liu H, Gao J, Zhang Z, Li YY, Wu RL, Pang XM（庞晓明）† High-Level Genetic Diversity and Complex Population Structure of Siberian Apricot (Prunus sibirica L.) in China as Revealed by Nuclear SSR Markers. PLoS ONE 9(2): e87381, 2014. (SCI收录)
Wang Z, Liu HB, Liu J, Li YY, Wu RL, Pang XM（庞晓明）†. Mining new microsatellite markers for Siberian apricot (Prunus sibirica L.) from SSR-enriched genomic library. Scientia Horticulturae. 166:65–69, 2014 (SCI收录)
Liu J, Liu HB, Ma LY,Wang SQ, Gao J, Li YY, Wu RL, Pang XM（庞晓明）†. A Chinese jujube (Ziziphus jujuba Mill.) fruit-expressed sequence tag (EST) library: Annotation and EST-SSR characterization. Scientia Horticulturae, 165: 99-105,2014(SCI收录)
Wang Z, Pang XM（庞晓明）, Wu WM, Wang JX, Wang ZH, Wu RL†. Modeling phenotypic plasticity in growth trajectories: A statistical framework. Evolution 68: 81-91,2013 (SCI收录)
吴丽萍， 李颖岳， 尹丹妮，庞晓明†. 枣和酸枣基因组大小测定, 北京林业大学学报,35(3):77-83,2013
Fu GF, Bo WB, Pang XM（庞晓明）, Wang Z, Chen L, Song YP, Zhang ZY, Li J, Wu RL†. Mapping shape QTLs using a radius-entroid-contour model. Heredity. 110(6):511-519,2013 (SCI收录)
Pang XM（庞晓明）, Wang Z, Yap JS, Bo WH, Lv YF, Xu F, Zhou T, Peng SF, Shen DF, Wu RL† A statistical procedure to map high-order epistasis for complex traits. Briefings in Bioinformatics. 14 (3): 302-314，2013(SCI收录)
Liu HB, Liu J, Wang Z, Ma LY, Wang SQ, Lin XG, Wu RL, Pang XM（庞晓明）†. Development and characterization of microsatellite markers in Prunus Sibirica (Rosaceae)," Applications in Plant Sciences Applications in Plant Sciences 1(3):1200074. 2013
Lin XG, Yao LX, Li YY, Wu RL and Pang XM（庞晓明）†. Identification of genes associated with fruit ripening in Ziziphus jujuba using suppression subtractive hybridization approach. Acta Physiologiae Plantarum. 35:1997–2008, 2013 (SCI收录)
Zhang ZY, Pang XM（庞晓明）, Han JW, Wang Y and Li YY†. Conservation genetics of Annamocarya sinensis (Dode) Leroy, an endangered endemic species, Genetics and Molecular Research, 12(3), 3956-3974, 2013(SCI收录)
Zhang ZY, Han JW, Jin Q, Wang Y, Pang XM（庞晓明）, Li YY†. Development and characterization of new microsatellites for walnut (Juglans regia), Genetics and Molecular Research, 12(4), 4723-4734, 2013(SCI收录)
Yang XX, Lv YF, Pang XM（庞晓明）, Tong CF, Wang Z, Li X, Feng SS, Tobias CM, Wu RL† A unifying framework for bivalent multilocus linkage analysis of allotetraploids. Briefings in Bioinformatics. 14: 96–108, 2013 (共同第一作者) (SCI收录)
Wang Z, Pang XM（庞晓明）, Lv YF, Xu F, Zhou T, Li X, Feng SS, Li JH, Li ZK, Wu RL†. A dynamic framework for quantifying the genetic architecture of phenotypic plasticity. Briefings in Bioinformatics. 14: 82–95, 2013 (共同第一作者) (SCI收录) (SCI收录)
Zhao XY, Tong CF, Pang XM（庞晓明）, Wang Z, Guo YQ, Du F, Wu RL†. Functional mapping of ontogeny in flowering plants. Briefs in Bioinformatics. Briefings in Bioinformatics 13: 317–328, 2012 (共同第一作者) (SCI收录)
Wang JX, Dong XL, Pang XM（庞晓明）, Lv YF, Yi HL, Yang XX, Wang Z, Wu S, Wu RL†. Simultaneous estimation of genetic linkage and preferential pairing factor for a triploid population with unphased markers. Chinese Science Bulletin. 57: 2711-2720, 2012 (SCI收录)
唐岩，荆艳萍，许莉斯，申连英，李颖岳，庞晓明†. 冬枣与临猗梨枣杂交子代果实裂果特性研究. 园艺学报，40（4）：749–754，2013
王斯琪, 唐诗哲, 孔德仓, 贺润平, 刘华波, 麻丽颖, 刘君, 王哲, 李颖岳, 申连英, 庞晓明†. 利用SSR 标记进行枣树子代苗父本鉴定. 园艺学报，39（11）：2133–2141，2012
麻丽颖，孔德仓，刘华波，王斯琪，李颖岳，庞晓明†.36份枣品种SSR指纹图谱的构建，园艺学报，39（4）：647-654，2012
林星谷,孔德仓,庞晓明†,李颖岳.冬枣过氧化氢酶基因的克隆及表达分析.西北植物学报, 32(6):1086-1092，2012
Hou W, Lin S, Li Y, Pang XM（庞晓明）, Zeng YY, Wu RL†. A model for linkage analysis with apomixis. Theoretical and Applied Genetics. 123(5):681-691, 2011 (SCI收录)
Tong CF, Zhang B, Wang Z, Xu M, Pang XM（庞晓明）, Si JN, Huang MR, Wu RL†. Multiallelic epistatic model for an out-bred cross and mapping algorithm of interactive quantitative trait loci. BMC Plant Biology. 11:148,2011
Li Q, Huang Z, Xu M, Wang C, Gai JY, Huang Y, Pang XM（庞晓明）, Wu RL†. Functional mapping of genotype-environment interactions for soybean growth by a semiparametric approach. Plant Methods. 6:13, 2010
刘颖，王莹，龙萃，张志毅，庞晓明†. 植物多胺代谢途径研究进展. 生物工程学报， 27(2): 147-155，2011
Pang XM（庞晓明）, Nada K, Kurosawa T, Ban Y, Moriguchi T†. Effect of methylglyoxal bis-(guanylhydrazone) on polyamine and ethylene biosynthesis of apple fruit after harvest. Acta Physiol Plant (2010) 32:1005–1010
Li, Q., ZW. Huang, M. Xu, CG. Wang, JY. Gai, YJ. Huang, XM. Pang （庞晓明）and RL. Wu†. Functional mapping of genotype-environment interactions for soybean growth by a semiparametric approach. Plant Methods 2010, 6:13
Wen XP*, Pang XM（庞晓明）*, Liu JH, Kitashiba H, Honda C and Moriguchi T. Overexpression of the apple spermidine synthase gene in pear confers multiple abiotic stress tolerance by altering polyamine titers. Transgenic Research, 2008，17:251-263 (*同等贡献)
Ban Y, Honda C, Bessho H, Pang XM（庞晓明）, Moriguchi T†. Suppression subtractive hybridization identifies genes induced in response to UV-B irradiation in apple skin: isolation of a putative UDP-glucose 4-epimerase. Journal of Experimental Botany, 2007, 58(7):1825-1834
Pang XM（庞晓明）, Hu CG, Deng XX†. Phylogenetic relationships within Citrus and its related genera as inferred from AFLP markers. Genetic resources and crop evolution. 2007,54: 429-436
Pang XM（庞晓明）, Nada K, Liu JH, Kitashiba H, Honda C, Yamashita H, Tatsuki M and Moriguchi T†. Interrelationship between polyamine and ethylene in 1-methylcyclopropene treated apple fruit after harvest. Physiologia Plantarum.2006，128: 351–359.
Liu JH, Nada K, Pang XM（庞晓明）, Honda C, Kitashiba H and Moriguch T†. Role of polyamines in peach fruit development and storage. Tree physiology. 2006, 26: 791-798
Liu JH, Nada K, Honda C, Kitashiba H, Wen XP, Pang XM（庞晓明）, Moriguchi T†. Polyamine biosynthesis of apple callus under salt stress: involvement of ADC pathway in stress response. Journal of Experimental Botany, 2006, 57: 2589-2599
Pang XM（庞晓明）, Wen XP, Hu CG, Deng XX†. Genetic diversity of Poncirus accessions as revealed by amplified fragment length polymorphism (AFLP). Journal of Horticultural Science & Biotechnology. 2006, 81: 269 – 275
Pang XM（庞晓明）, Hu CG, Deng XX†. Phylogenetic relationships among Citrus and its relatives as revealed by SSR markers. Acta Genetica Sinica (遗传学报). 2003, 30: 81-87
Li YH, Qian Q, Zhou YH, Yan MX, Sun L, Zhang M, Fu ZM, Wang YH, Han B, Pang XM（庞晓明）, Chen MS, Li JY†. BRITTLE CULM 1, which encodes a cobra-like protein, affects the mechanical properties of rice plants. The Plant Cell, 2003, 15: 2020-2031
庞晓明, 胡春根, 邓秀新†, 枳属36份特异种质的AFLP指纹图谱构建与分析, 园艺学报, 2003, 30(4): 394-398
庞晓明, 胡春根, 伊华林等, AFLP技术在果树遗传育种研究中的应用, 生命的化学,2001, 20(5)：31-32.
文晓鹏, 庞晓明, 邓秀新†, 刺梨及部分近缘种形态学性状和RAPD标记分析, 中国农业科学, 2003, 35 (7): 823-828
Wen XP, Pang XM（庞晓明）,and Deng XX†. Characterization of genetic relationships of Rosa roxburghii Tratt and its relatives using morphological traits and RAPD and AFLP markers. Journal of Horticultural Science & Biotechnology. 2004, 79: 189-196
Liu JH, Pang XM（庞晓明）, Chen YJ, Deng XX†. Molecuar Characterization of the Nuclear and Cytoplasmic Genomes of Intergeneric Diploid Plants from Cell Fusion between Micocitrus papuana and Rough Lemon. Plant cell reporter, 2002, 21: 327-332
出版专著
续九如（主编），毛永民，庞晓明（副主编），枣树良种选育与高效栽培新技术，中国农业出版社. 32万字，2011
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